rs31724891 SNP Detail

Summary

• ID
  rs31724891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100141208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTAAAAG AGTGGTTTAT TGGGTGCATT GCGAGTGAGC
  AATGGGCAGA GTAGAGTACT GTCAGCTTTG TAAGATCACC ACCAGCTATG TTGGGATCAC
  Y
  ATCCACCCAC CAGCTATGGG GTTTTGCCAC TTGATAGTGA AGGTTTATTT TATCTAGTCT
  TGTTTAAAGT AAGCCAGCTG GCTAATAAAG CCACACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47082932	NES11612381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31724891					SNP	T	T	T	T	C	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082932	NES11612381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100141208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	717 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	1148 bp upstream
Rr652131	regulatory region 652131	291 bp proximal
Rr652132	regulatory region 652132	418 bp proximal
Rr652133	regulatory region 652133	1019 bp proximal
Tssr68123	transcription start site region 68123	1318 bp upstream
Tssr68124	transcription start site region 68124	1348 bp upstream
Tssr68125	transcription start site region 68125	1769 bp upstream
Tssr68126	transcription start site region 68126	1828 bp upstream
Tssr68127	transcription start site region 68127	1938 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	1357 bp upstream