rs31725057 SNP Detail

Summary

• ID
  rs31725057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115507775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTCTCCA TGAACTGATT
  GCTTAAGAAA GTTTTAACTT TAGCCAACGC TTACTTGCAC ACACACACAC ACGAAAGTCA
  CCCTGCTAGC GATAACGAAG CACGCCACTT TGTTTTAACT TCAGGTACAT TAATTTCCAG
  AAACACATAC TGCTAAGTTT GCATGGGCAC TTTTAACTTC CTCCGCTCCC CACACCCCCA
  R
  CATTGCCTCC TCTCAACAGA ACTAGCAATC CCTAAAGGGC ACACAGCACT ACTTAAGTTG
  GACACACAGC ACTAAATAAG TACTCTAAAG TCTGCACAGT AATTGATCAA CTCTATAACA
  AATGAGGGGG GAGGGGACCC TAGAGACATT GTAGTCATTT CTGTGACAAA AGCTTACGAA
  ACTCAACATT TCTCCACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45564101	mCV24998853	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss135664478	ENSMUSSNP3405366	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31725057					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115507775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	1575 bp distal
Cpgi13725	CpG island 13725	518 bp proximal
Gm9889	predicted gene 9889	897 bp upstream
Rr397956	regulatory region 397956	1806 bp upstream
Rr583584	regulatory region 583584	1116 bp distal
Rr583585	regulatory region 583585	407 bp proximal
Rr583586	regulatory region 583586	936 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	1030 bp upstream
Tssr35273	transcription start site region 35273	1572 bp upstream
Tssr35274	transcription start site region 35274	1513 bp upstream
Tssr35275	transcription start site region 35275	1259 bp upstream
Tssr35276	transcription start site region 35276	379 bp upstream
Tssr35277	transcription start site region 35277	320 bp upstream
Tssr35278	transcription start site region 35278	654 bp downstream
Tssr35279	transcription start site region 35279	676 bp downstream
Tssr35280	transcription start site region 35280	728 bp downstream
Tssr35281	transcription start site region 35281	763 bp downstream
Tssr35282	transcription start site region 35282	807 bp downstream
Tssr35283	transcription start site region 35283	905 bp downstream