rs31725291 SNP Detail

Summary

• ID
  rs31725291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179790207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT TTCAGTACTT TTAGAGTTGG
  M
  ATTTGAGTCC TTCAGTTACA GCTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45063708	mCV24589568	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss146372746	ENSMUSSNP614963	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31725291					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179790207 () rs orientation: forward

Symbol	Name	Function Class
Cdc42bpa	CDC42 binding protein kinase alpha	within coordinates
Cpgi1100	CpG island 1100	1912 bp distal
Rr29078	regulatory region 29078	within coordinates
Tssr10435	transcription start site region 10435	1863 bp downstream