rs31725388 SNP Detail

Summary

• ID
  rs31725388
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggtcctga tcttatggat cttttgatct
  agtgagcaag ccagacaCAG CAGCTCGCCA TGACCACAGT TTCTAAGCCC GGGGAGAATT
  CCAATAATCC CCTCTACCAC ACTCTTACTG CCAGACTAAG GAGAGTGGCC ATTCTTGAGT
  W
  ACTTCCGCCA GCGGAAGGAA GGAGGCTACT TCTGTGAGGA TGACATAGTG TGTGGCCTTG
  GGGCTCATGG AGAAGACTAG ATACCCTCAC CAAGGCCTGC AGAGCCATCT ATCTGCCTGA
  GGCCATTTGG CTCATGAGAA GCAGCCAGCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45064201	mCV24740881	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	A
ss145547955	ENSMUSSNP2122124	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
ss319993820	CHEV_1_137732353	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31725388					SNP	A	A	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763514 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	913 bp distal
Rr419293	regulatory region 419293	1349 bp distal
Rr419294	regulatory region 419294	88 bp proximal
Rr419295	regulatory region 419295	648 bp proximal
Rr419296	regulatory region 419296	1116 bp proximal
Rr419297	regulatory region 419297	1973 bp proximal
Tnnt2	troponin T2, cardiac	578 bp upstream
Tssr9005	transcription start site region 9005	604 bp upstream