rs31725889 SNP Detail

Summary

• ID
  rs31725889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100142553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTA GACTTAAGTT CTGTAGGCGC
  R
  GGTTCGCAGC TACTGTCAGT TCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47082941	NES11612359	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31725889					SNP	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082941	NES11612359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100142553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	within coordinates
Gm72028	predicted gene, 72028	97 bp upstream
Rr400469	regulatory region 400469	within coordinates
Rr652131	regulatory region 652131	327 bp distal
Rr652132	regulatory region 652132	906 bp distal
Rr652133	regulatory region 652133	within coordinates
Tssr68123	transcription start site region 68123	22 bp downstream
Tssr68124	transcription start site region 68124	3 bp upstream
Tssr68125	transcription start site region 68125	424 bp upstream
Tssr68126	transcription start site region 68126	483 bp upstream
Tssr68127	transcription start site region 68127	593 bp upstream
Tssr68128	transcription start site region 68128	698 bp upstream
Tssr68129	transcription start site region 68129	923 bp upstream
Tssr68130	transcription start site region 68130	1545 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	12 bp upstream