rs31725892 SNP Detail

Summary

• ID
  rs31725892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100142559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA AGTTCTGTAG GCGCGGGTTC
  R
  CAGCTACTGT CAGTTCCGCC CTCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47082944	NES11612361	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31725892					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082944	NES11612361	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100142559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	within coordinates
Gm72028	predicted gene, 72028	103 bp upstream
Rr400469	regulatory region 400469	within coordinates
Rr652131	regulatory region 652131	333 bp distal
Rr652132	regulatory region 652132	912 bp distal
Rr652133	regulatory region 652133	5 bp distal
Tssr68123	transcription start site region 68123	28 bp downstream
Tssr68124	transcription start site region 68124	within coordinates
Tssr68125	transcription start site region 68125	418 bp upstream
Tssr68126	transcription start site region 68126	477 bp upstream
Tssr68127	transcription start site region 68127	587 bp upstream
Tssr68128	transcription start site region 68128	692 bp upstream
Tssr68129	transcription start site region 68129	917 bp upstream
Tssr68130	transcription start site region 68130	1539 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	6 bp upstream