rs31727599 SNP Detail

Summary

• ID
  rs31727599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84337813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC TGGGTTAGGC CAGATAAGAA
  R
  CTCGTGAACA CATACAAGTT TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46062633	mCV23881096	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss145208979	ENSMUSSNP4581845	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31727599					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84337813 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	1035 bp upstream
Cpgi19383	CpG island 19383	701 bp proximal
Rr400423	regulatory region 400423	1209 bp upstream
Rr650631	regulatory region 650631	within coordinates
Rr650632	regulatory region 650632	607 bp proximal
Rr650633	regulatory region 650633	1150 bp proximal
Rr650634	regulatory region 650634	1342 bp proximal
Tssr73444	transcription start site region 73444	1189 bp downstream
Tssr73445	transcription start site region 73445	1218 bp downstream
Tssr73446	transcription start site region 73446	1240 bp downstream
Tssr73447	transcription start site region 73447	1299 bp downstream
Tssr73448	transcription start site region 73448	1329 bp downstream
Tssr73449	transcription start site region 73449	1343 bp downstream
Tssr73450	transcription start site region 73450	1375 bp downstream
Zfand6	zinc finger, AN1-type domain 6	within coordinates