rs31727713 SNP Detail

Summary

• ID
  rs31727713
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60163604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCCC GCCTCCACAC
  CCCCGCAGTG ACTGGAAGAG GTATTCTACA GACGTCAGTT TTTCTCTTCT TAAACTGCGA
  CTGTTAACTG CAGATAAGCA TAGCATTTTT TTAAATCCTC ACAATACTTC GAGATTTCTC
  CCTTGTTTTC TCTCCTAGCA CAGCCACAGT CAATAGGTTC ACCAGTGATC ATGACGTTTT
  W
  CCAGTTATTA TGGAAAATAT CCCTAGGGTC CAAAGGGATC CTTATAGTGT GGCTATAGAA
  AACAAATGGC CTAGTTTCAA AGCTCCATCT CTTTCTTGAT AGTTGTATGA AATTCTTTAG
  TCATCCTGTG TCTCAGCTTC CTCAGCCATA AAATATGAAT AATAACAGCA CATTTAGAAA
  AATGTTACAT ATTAAACATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49769259	NES12383680	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31727713					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49769259	NES12383680	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60163604 () rs orientation: forward

Symbol	Name	Function Class
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Rr691612	regulatory region 691612	135 bp distal
Tssr161069	transcription start site region 161069	297 bp upstream
Tssr161070	transcription start site region 161070	490 bp upstream
Tssr161071	transcription start site region 161071	505 bp upstream
Tssr161072	transcription start site region 161072	824 bp upstream