rs31727820 SNP Detail

Summary

• ID
  rs31727820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100143427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGGGAG TAAAGACTCC
  TGAGTTCTTC CCCTAGACCC TGGCTGCTCT GAGTGAGAAC TGAGCCTTGC ATGGGTCCCT
  CCCAGCAAGG CTGTCTGAAA GGACTTGTGT GACAGATGAC CCTTCCTTGC AGGGCGGTGG
  TCCTGCAAAG ACAATCTTCC TTTCTAAACT TGGCTTCCTT CCTCTCCCCC ACAGGACACA
  R
  TAGTATGAAC TTTAAGTGTT TCGTCTCCCA GCCATTTTCT ATGGAAAATC GAGGGGATCG
  GGCCATGGTA GCCACCGGCA GCTTTGAAGA ACGAGACACC TTTAGAGAAG CTTGACCTTG
  GAGGCCTCAG CCTGAGACCT CAAAGCAGCC TCCAGGTAAG GAGTCCCGGC TAAGGAAGCC
  TTCTCTCAGG CCTGGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47082965	NES11612368	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31727820					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082965	NES11612368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100143427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	510 bp distal
Gm72028	predicted gene, 72028	971 bp upstream
Rr368386	regulatory region 368386	1502 bp upstream
Rr400469	regulatory region 400469	771 bp downstream
Rr652131	regulatory region 652131	1201 bp distal
Rr652132	regulatory region 652132	1780 bp distal
Rr652133	regulatory region 652133	873 bp distal
Tssr68123	transcription start site region 68123	896 bp downstream
Tssr68124	transcription start site region 68124	850 bp downstream
Tssr68125	transcription start site region 68125	406 bp downstream
Tssr68126	transcription start site region 68126	372 bp downstream
Tssr68127	transcription start site region 68127	265 bp downstream
Tssr68128	transcription start site region 68128	132 bp downstream
Tssr68129	transcription start site region 68129	49 bp upstream
Tssr68130	transcription start site region 68130	671 bp upstream
Tssr68131	transcription start site region 68131	1767 bp upstream
Tssr73743	transcription start site region 73743	1457 bp downstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	within coordinates