rs31727919 SNP Detail

Summary

• ID
  rs31727919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122871441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCTCTCC AGGCAAGACC
  AGGAACTCGG CTTCCCAGAA AACTCAACTT TGTCCTTTAG CCTCAGCACT CCTTAGCTAT
  AGGACCACAG TAGGGGACAG AGGCAGTCTG GTGACACTGG TGGCATTCTC AGTGGTCTAG
  GCCATGCTGA CGGGGTGTTC TGGGAAACTG CTTCTGATAA ACCAGCCCCC TTGGAGGCAC
  Y
  GGGTGCAACA AGCTCATGCT ACATGGAGAC CTGAAGGCAG CCGGCTGTGA GGACCTTGGG
  AAGGGAGAAT GTTGAGCAAC CAGGAGAGTC CTGACTCAGT CTGCTGTCTG GGATGCAGGG
  CTGATTCTCA GGCCTGCTTC TTGTTGGAGT CTGACTCCAG AACAGTGGGT AAGAGGATGC
  GTCAGCTCCC AGCATTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47582872	NES11163858	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31727919					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582872	NES11163858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122871441 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	1060 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1041 bp distal
Rr179926	regulatory region 179926	1760 bp proximal
Rr188324	regulatory region 188324	within coordinates