rs31728159 SNP Detail

Summary

• ID
  rs31728159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37299953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGATACC AAGAGGCTGT GGAAACATTA
  CACAAAGACC TTGCACTTCA AGCTGGACAT CCTGTCTCTC ATCCCCACAG ACCTGGCTTA
  TTTAAAGTTG GGCGTGAACT ACCCAGAACT GAGGTTCAAC CGCCTCCTGA AGTTCTCTCG
  R
  CTCTTTGAAT TCTTTGACCG CACAGAGACA AGGACCAACT ACCCCAACGT GTTCAGGATA
  GGGAACTTGG TCCTTTACAC ACTCATCATC ATCCACTGGA ATGCCTGCAT CTACTTTGCC
  ATTTCCAAGT TCATTGGTTT TGGGACAGAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45064139	mCV24143452	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148937696	ENSMUSSNP3170982	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss319691089	CHEV_1_37317717	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31728159					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37299953 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	406 bp proximal
Gm69908	predicted gene, 69908	within coordinates