rs31728160 SNP Detail

Summary

• ID
  rs31728160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78635341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TCTGCAGCTG CTGTAGCTGC
  S
  GGTCCGTCCC GCCGCTCCCC TCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45064140	mCV22632339	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss144751893	ENSMUSSNP2472817	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31728160					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78635341 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	259 bp upstream
Cpgi461	CpG island 461	within coordinates
Rr17618	regulatory region 17618	741 bp distal
Rr29694	regulatory region 29694	within coordinates
Rr371565	regulatory region 371565	1924 bp downstream
Rr396121	regulatory region 396121	73 bp upstream
Tssr7581	transcription start site region 7581	232 bp upstream
Tssr7582	transcription start site region 7582	250 bp upstream
Tssr12428	transcription start site region 12428	649 bp downstream
Tssr12429	transcription start site region 12429	666 bp downstream
Utp14b	UTP14B small subunit processome component	259 bp upstream