rs31728815 SNP Detail

Summary

• ID
  rs31728815
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100143594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC AGCCTCCAGG TAAGGAGTCC
  S
  GGCTAAGGAA GCCTTCTCTC AGGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46102899	mCV24673400	ABI	CRAMUS_MOUSE	f	SNP		G	G					C
ss47082971	NES11612370	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C		C	C	G		C	C	G	C		C
ss145533140	ENSMUSSNP2355461	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							C
ss322348743	CHEV_7_107642896	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31728815					SNP	G	G	G	G	G	G	C	C	C	C	G	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082971	NES11612370	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100143594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	677 bp distal
Gm72028	predicted gene, 72028	1138 bp upstream
Rr368386	regulatory region 368386	1335 bp upstream
Rr400469	regulatory region 400469	938 bp downstream
Rr652131	regulatory region 652131	1368 bp distal
Rr652132	regulatory region 652132	1947 bp distal
Rr652133	regulatory region 652133	1040 bp distal
Tssr68123	transcription start site region 68123	1063 bp downstream
Tssr68124	transcription start site region 68124	1017 bp downstream
Tssr68125	transcription start site region 68125	573 bp downstream
Tssr68126	transcription start site region 68126	539 bp downstream
Tssr68127	transcription start site region 68127	432 bp downstream
Tssr68128	transcription start site region 68128	299 bp downstream
Tssr68129	transcription start site region 68129	57 bp downstream
Tssr68130	transcription start site region 68130	504 bp upstream
Tssr68131	transcription start site region 68131	1600 bp upstream
Tssr73743	transcription start site region 73743	1290 bp downstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	within coordinates