rs31728817 SNP Detail

Summary

• ID
  rs31728817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100144070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTGGCAC GCACATGAAG GTCAGAAGAC AACTCAGGCC
  TCCTACCATC TGTGTCCCAA TGGCAAGCAC CCTTACCCAC TGAGCCATCT TGCTGGTCTG
  R
  GCTTCCATTC TTTTTTTTTT TTTTCTTTTG TCCTAGCTTT TGATGTCCCT GTGAATGAGA
  TTAGAAATTG GGTGTTGTTT TTTTATTGCC TCCAGTGGTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47082974	NES11612259	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31728817					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082974	NES11612259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100144070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	1153 bp distal
Gm72028	predicted gene, 72028	1614 bp upstream
Rr368386	regulatory region 368386	859 bp upstream
Rr400469	regulatory region 400469	1414 bp downstream
Rr652131	regulatory region 652131	1844 bp distal
Rr652133	regulatory region 652133	1516 bp distal
Tssr68123	transcription start site region 68123	1539 bp downstream
Tssr68124	transcription start site region 68124	1493 bp downstream
Tssr68125	transcription start site region 68125	1049 bp downstream
Tssr68126	transcription start site region 68126	1015 bp downstream
Tssr68127	transcription start site region 68127	908 bp downstream
Tssr68128	transcription start site region 68128	775 bp downstream
Tssr68129	transcription start site region 68129	533 bp downstream
Tssr68130	transcription start site region 68130	28 bp upstream
Tssr68131	transcription start site region 68131	1124 bp upstream
Tssr68132	transcription start site region 68132	1864 bp upstream
Tssr73743	transcription start site region 73743	814 bp downstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	within coordinates