rs31728820 SNP Detail

Summary

• ID
  rs31728820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100144115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCTCA CGTGTGCATG
  TGTGTGCATG CACGTTTATG TAAAGGCACA CGGGTGCTGT GGCACGCACA TGAAGGTCAG
  AAGACAACTC AGGCCTCCTA CCATCTGTGT CCCAATGGCA AGCACCCTTA CCCACTGAGC
  CATCTTGCTG GTCTGAGCTT CCATTCTTTT TTTTTTTTTT CTTTTGTCCT AGCTTTTGAT
  R
  TCCCTGTGAA TGAGATTAGA AATTGGGTGT TGTTTTTTTA TTGCCTCCAG TGGTTGTCCG
  GTCCTATAAA GTGGATTCTG TTTTTGTTGG TTCATTTTGG GTCGGGATCT CAGGACCTCT
  CTTCGGCTGC CCTGGAGCTT TAGATGCAGA CCGTGCCTGA CAGGATTATC TTTCTAGGCC
  TGCGTTTTAG TCATAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47082977	NES11612260	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31728820					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082977	NES11612260	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100144115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	1198 bp distal
Gm72028	predicted gene, 72028	1659 bp upstream
Rr368386	regulatory region 368386	814 bp upstream
Rr400469	regulatory region 400469	1459 bp downstream
Rr652131	regulatory region 652131	1889 bp distal
Rr652133	regulatory region 652133	1561 bp distal
Tssr68123	transcription start site region 68123	1584 bp downstream
Tssr68124	transcription start site region 68124	1538 bp downstream
Tssr68125	transcription start site region 68125	1094 bp downstream
Tssr68126	transcription start site region 68126	1060 bp downstream
Tssr68127	transcription start site region 68127	953 bp downstream
Tssr68128	transcription start site region 68128	820 bp downstream
Tssr68129	transcription start site region 68129	578 bp downstream
Tssr68130	transcription start site region 68130	12 bp downstream
Tssr68131	transcription start site region 68131	1079 bp upstream
Tssr68132	transcription start site region 68132	1819 bp upstream
Tssr68133	transcription start site region 68133	1963 bp upstream
Tssr73743	transcription start site region 73743	769 bp downstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	within coordinates