rs31728845 SNP Detail

Summary

• ID
  rs31728845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122871612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATAAA CCAGCCCCCT
  TGGAGGCACC GGGTGCAACA AGCTCATGCT ACATGGAGAC CTGAAGGCAG CCGGCTGTGA
  GGACCTTGGG AAGGGAGAAT GTTGAGCAAC CAGGAGAGTC CTGACTCAGT CTGCTGTCTG
  GGATGCAGGG CTGATTCTCA GGCCTGCTTC TTGTTGGAGT CTGACTCCAG AACAGTGGGT
  R
  AGAGGATGCG TCAGCTCCCA GCATTGCCTC CCTGGGCTAT GTCCTCCCGT GACCCCTGTA
  AGGTCACTCT GTCGTCTCCC TCAGTAGTCC TGGAGACAAG TCTGAGGCAG AGAGGTCAGC
  TTCATGGGAG CAACTGAAGG CTGACCTCTG TGTCCCCAGA TGAGTCACCT TGTGATGATT
  ACCTTCATCA TCCACAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47582878	NES11163860	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A		G	A	G		A
ss322848688	CHEV_8_124668773	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31728845					SNP	A	A	A	A	A	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582878	NES11163860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122871612 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	889 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1212 bp distal
Rr179926	regulatory region 179926	1589 bp proximal
Rr188324	regulatory region 188324	within coordinates