rs31728848 SNP Detail

Summary

• ID
  rs31728848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122871721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGAGT CCTGACTCAG
  TCTGCTGTCT GGGATGCAGG GCTGATTCTC AGGCCTGCTT CTTGTTGGAG TCTGACTCCA
  GAACAGTGGG TAAGAGGATG CGTCAGCTCC CAGCATTGCC TCCCTGGGCT ATGTCCTCCC
  GTGACCCCTG TAAGGTCACT CTGTCGTCTC CCTCAGTAGT CCTGGAGACA AGTCTGAGGC
  R
  GAGAGGTCAG CTTCATGGGA GCAACTGAAG GCTGACCTCT GTGTCCCCAG ATGAGTCACC
  TTGTGATGAT TACCTTCATC ATCCACAGCC CAAATAAGTT ACCCTGAGGA GGGGAATTCC
  TGTCCCCAAA CCCCATGCTC CCTGTTGCCC GCAGAGCTCA TGAGTCACGC CTCACTGCCT
  ATTTTTAGGT CCTTTTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47582881	NES11163861	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A		G	A	G		A
ss322848689	CHEV_8_124668882	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31728848					SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582881	NES11163861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122871721 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	780 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1321 bp distal
Rr179926	regulatory region 179926	1480 bp proximal
Rr188324	regulatory region 188324	within coordinates