rs31728864 SNP Detail

Summary

• ID
  rs31728864
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43113746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTCGCAG ACCTCTGGAC AAGTCTGTGC TGTGTGAATA
  TGCTTCCTTC CTAGAAGAAA GAGCCTGTGG GTGGGGATAA GAGCAAAGGC AGGGACCAGA
  S
  CTCACCTTGT CTGAAGGAGG AGGTCTAAGC TGGACTCTTA GGTCTGAGAG AGGCCTGGAC
  CTCACTTAGG TGTGACGGGG GAGGGCTAGG GCCTGAATC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46062815	mCV22871753	ABI	CRAMUS_MOUSE	f	SNP		C	G				C
ss51478102	NES13969834	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C	G	G		C	G	C	C
ss149073683	ENSMUSSNP978710	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G				C
ss322197029	CHEV_7_50719692	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31728864					SNP	G	C	G	G	G	G	C	G	G	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478102	NES13969834	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43113746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	509 bp proximal
Cpgi18933	CpG island 18933	1840 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like	735 bp downstream
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	1408 bp upstream
Rr645966	regulatory region 645966	521 bp proximal
Rr645967	regulatory region 645967	1186 bp proximal
Rr645968	regulatory region 645968	1248 bp proximal
Rr645969	regulatory region 645969	1256 bp proximal
Rr645970	regulatory region 645970	1948 bp proximal
Tssr2211	transcription start site region 2211	1994 bp downstream
Tssr66006	transcription start site region 66006	1209 bp downstream
Tssr66007	transcription start site region 66007	1137 bp downstream
Tssr66008	transcription start site region 66008	1107 bp downstream
Tssr66009	transcription start site region 66009	1096 bp downstream
Tssr66010	transcription start site region 66010	1686 bp upstream
Tssr72134	transcription start site region 72134	70 bp upstream
Tssr72135	transcription start site region 72135	1241 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates