rs31729684 SNP Detail

Summary

• ID
  rs31729684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30913838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTAGTGT GTTGAAATCC AGAGAGCAAA CACGGAGTCC
  ACAACAGTTT TGTTTACCCG ATCCCAGCCT TCAGTTAAGT GTTATGGTTT AACTGTTGCC
  Y
  GTCGTAGGTC ACTGTAACCA AAACGAGCCC CTTAAAGACC ACGATTGAGT CTTCAGTCTG
  CAAAGACAAT TACAACGTTT TCAGCACTTG CGGAGCACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45063143	mCV24836476	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs31729684					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30913838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi99	CpG island 99	485 bp distal
Gm7256	predicted gene 7256	1282 bp downstream
Gm70275	predicted gene, 70275	175 bp upstream
Phf3	PHD finger protein 3	849 bp upstream
Rr371054	regulatory region 371054	within coordinates
Rr408756	regulatory region 408756	1187 bp distal
Rr408757	regulatory region 408757	686 bp distal
Rr408758	regulatory region 408758	within coordinates
Rr408759	regulatory region 408759	253 bp proximal
Tssr6135	transcription start site region 6135	744 bp downstream
Tssr6136	transcription start site region 6136	251 bp upstream
Tssr11167	transcription start site region 11167	1100 bp upstream
Tssr11168	transcription start site region 11168	832 bp upstream
Tssr11169	transcription start site region 11169	1154 bp downstream