rs31729777 SNP Detail

Summary

• ID
  rs31729777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122871972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTCACC TTGTGATGAT
  TACCTTCATC ATCCACAGCC CAAATAAGTT ACCCTGAGGA GGGGAATTCC TGTCCCCAAA
  CCCCATGCTC CCTGTTGCCC GCAGAGCTCA TGAGTCACGC CTCACTGCCT ATTTTTAGGT
  CCTTTTCCTT CAACGCTGCT CTGGGAACTC ACTTCCCCCA CACCCTGCTC CAACAGACCT
  Y
  GAACACGTCT GCGTGTGGCC CGGTGTCCAC TGCAGTGTGA CCAGATCATA GAGACTGAGA
  TTGCTGCAGC CCACCCTACC CCCACCCCGA CCCCCGCGCT GGGAGTTCTC CAGCCCAGTT
  CAGCAGCCAT GATGGTCACT TTGCCTTGTT CAGCTAGAGC AGGTCTGGAG TGCCTGAGCA
  GTCACCAAGC AAAGAAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47582890	NES11163866	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31729777					SNP	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582890	NES11163866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122871972 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	529 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1572 bp distal
Rr179926	regulatory region 179926	1229 bp proximal
Rr188324	regulatory region 188324	within coordinates