rs31729938 SNP Detail

Summary

• ID
  rs31729938
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCG GGAGGCATGT GCTAGTAAAC
  K
  GTTGTCCTCC ATGGCTGGCT TGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46062942	mCV23833163	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G	G
ss148642717	ENSMUSSNP6828644	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss322127379	CHEV_7_29939928	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31729938					SNP	T	T	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854334 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	771 bp upstream
Cpgi18740	CpG island 18740	390 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1544 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	948 bp downstream
Rr400219	regulatory region 400219	1203 bp upstream
Rr644490	regulatory region 644490	681 bp distal
Rr644491	regulatory region 644491	281 bp proximal
Rr644492	regulatory region 644492	793 bp proximal
Rr644493	regulatory region 644493	1264 bp proximal
Rr644494	regulatory region 644494	1287 bp proximal
Rr644495	regulatory region 644495	1412 bp proximal
Tssr65599	transcription start site region 65599	734 bp upstream
Tssr65600	transcription start site region 65600	762 bp upstream
Tssr65601	transcription start site region 65601	835 bp upstream
Tssr71610	transcription start site region 71610	688 bp downstream
Tssr71611	transcription start site region 71611	713 bp downstream
Tssr71612	transcription start site region 71612	808 bp downstream
Tssr71613	transcription start site region 71613	1027 bp downstream
Tssr71614	transcription start site region 71614	1054 bp downstream
Tssr71615	transcription start site region 71615	1263 bp downstream