rs31730456 SNP Detail

Summary

• ID
  rs31730456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122872219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGGGAGT TCTCCAGCCC AGTTCAGCAG
  CCATGATGGT CACTTTGCCT TGTTCAGCTA GAGCAGGTCT GGAGTGCCTG AGCAGTCACC
  AAGCAAAGAA AGGTCACTAG GTCAGAAGAG TCAGCCAGTA TCCAGAAAGA ATGCACTGGG
  Y
  GGCTGTCAAC TCTGGTCCCA GGCTGTGTTT TTCAGCATCC AGAGCAGTCC CACAGTGGAC
  ACCCTGCTCT GCCCATCATC CTAGGAAGGG CTGAGTAAGA CCAGCAACTC AGCCATTCAT
  CTATTTTaga ggttctcagc cttcctaact                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47582899	NES11163870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	C	T		C
ss322848695	CHEV_8_124669380	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31730456					SNP	C	C	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582899	NES11163870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122872219 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	282 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1819 bp distal
Rr179926	regulatory region 179926	982 bp proximal
Rr179927	regulatory region 179927	1982 bp proximal
Rr188324	regulatory region 188324	within coordinates