rs31730459 SNP Detail

Summary

• ID
  rs31730459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122872250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCACCC CGACCCCCGC
  GCTGGGAGTT CTCCAGCCCA GTTCAGCAGC CATGATGGTC ACTTTGCCTT GTTCAGCTAG
  AGCAGGTCTG GAGTGCCTGA GCAGTCACCA AGCAAAGAAA GGTCACTAGG TCAGAAGAGT
  CAGCCAGTAT CCAGAAAGAA TGCACTGGGC GGCTGTCAAC TCTGGTCCCA GGCTGTGTTT
  Y
  TCAGCATCCA GAGCAGTCCC ACAGTGGACA CCCTGCTCTG CCCATCATCC TAGGAAGGGC
  TGAGTAAGAC CAGCAACTCA GCCATTCATC TATTTTAGAG GTTCTCAGCC TTCCTAACTC
  CACGGCCCTT TAATACAGTT CCTCGTGTTG TGGTGACCCC CAACCGTAAA ATTATTTCCA
  TTGCTACTGT TTGCTACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47582902	NES11163871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T		C	T	C		C
ss322848696	CHEV_8_124669411	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31730459					SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582902	NES11163871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122872250 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	251 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1850 bp distal
Rr179926	regulatory region 179926	951 bp proximal
Rr179927	regulatory region 179927	1951 bp proximal
Rr188324	regulatory region 188324	within coordinates