rs31730462 SNP Detail

Summary

• ID
  rs31730462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122872281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCCCAG TTCAGCAGCC
  ATGATGGTCA CTTTGCCTTG TTCAGCTAGA GCAGGTCTGG AGTGCCTGAG CAGTCACCAA
  GCAAAGAAAG GTCACTAGGT CAGAAGAGTC AGCCAGTATC CAGAAAGAAT GCACTGGGCG
  GCTGTCAACT CTGGTCCCAG GCTGTGTTTT TCAGCATCCA GAGCAGTCCC ACAGTGGACA
  Y
  CCTGCTCTGC CCATCATCCT AGGAAGGGCT GAGTAAGACC AGCAACTCAG CCATTCATCT
  ATTTTAGAGG TTCTCAGCCT TCCTAACTCC ACGGCCCTTT AATACAGTTC CTCGTGTTGT
  GGTGACCCCC AACCGTAAAA TTATTTCCAT TGCTACTGTT TGCTACTGTT ATGGCTGATA
  ATGTAAATCT CTGTGTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47582905	NES11163872	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31730462					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582905	NES11163872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122872281 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	220 bp downstream
Gm56875	predicted gene, 56875	within coordinates
Rr174877	regulatory region 174877	1881 bp distal
Rr179926	regulatory region 179926	920 bp proximal
Rr179927	regulatory region 179927	1920 bp proximal
Rr188324	regulatory region 188324	within coordinates