rs31731333 SNP Detail

Summary

• ID
  rs31731333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122872944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCAGCC CACCTGACGG
  GGTCTTGATC AGGCTGAGGT GAACCCAAAG AATTACCGTT GTAACGTTAC TAGTCATGGT
  GTGACAGATG AGCGCCCCAG CATTATGGGT GCACACGTGC ATGTATCATC CATGCATGTA
  TCAAGGTGCC CCATGCTGTC CAGCCCTTTG TCACTGACAT AGCAGCCAAT GAGATCAATT
  Y
  ACGAGAGAAA AGTCTTATTT GGCTCATGGT CTCAGAAGTT CAAGTCCATG GTCTCGCTGT
  CTACCTTGTT GAGTTGGGTC GGTGACGATG TTGCGTTGTG GCAATAGTTC ATGGTAGAGA
  GAGCCTGGTC TTCTCATGGC TGCTGGGAAA CAGAGAGAGC CAGGAAAGGG CTAAGGGTCT
  GACTGTCCCC AATGACCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47582920	NES11163811	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31731333					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582920	NES11163811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122872944 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	within coordinates
Gm56875	predicted gene, 56875	within coordinates
Rr179926	regulatory region 179926	257 bp proximal
Rr179927	regulatory region 179927	1257 bp proximal
Rr188324	regulatory region 188324	145 bp distal