rs31732598 SNP Detail

Summary

• ID
  rs31732598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100141113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC AGCCCCTTCA CCAATTTTTT
  W
  AAAGAGTGGT TTATTGGGTG CATTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47082923	NES11612378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	T	T	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31732598					SNP	A	A	A	A	A	T	T	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47082923	NES11612378	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100141113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	812 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	1243 bp upstream
Rr652131	regulatory region 652131	386 bp proximal
Rr652132	regulatory region 652132	513 bp proximal
Rr652133	regulatory region 652133	1114 bp proximal
Tssr68123	transcription start site region 68123	1413 bp upstream
Tssr68124	transcription start site region 68124	1443 bp upstream
Tssr68125	transcription start site region 68125	1864 bp upstream
Tssr68126	transcription start site region 68126	1923 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	1452 bp upstream