rs31734243 SNP Detail

Summary

• ID
  rs31734243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95034279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGA GTGCTGGGAT TAAAGGCATG
  Y
  GCCACCACGC CCAGCTTGGT TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss45565394	mCV24559512	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135510038	ENSMUSSNP2534195	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320841122	CHEV_3_94930890	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs31734243					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95034279 () rs orientation: forward

Symbol	Name	Function Class
Rr580820	regulatory region 580820	1598 bp distal
Tmod4	tropomodulin 4	Intron
Tssr30493	transcription start site region 30493	769 bp downstream
Tssr30494	transcription start site region 30494	755 bp downstream
Tssr30495	transcription start site region 30495	741 bp downstream
Tssr30496	transcription start site region 30496	719 bp downstream
Tssr30497	transcription start site region 30497	457 bp upstream