rs31734761 SNP Detail

Summary

• ID
  rs31734761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100944688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCGTGT ACGGGGGCTG
  CGGCAGGCGC TCCATGATCA GATCCAGCTT GTCCCAGTCA GGCGCGGGGG CGGCGGCGCG
  GCGAGCACGC GGAGCCGGGA CAGGGACCCT GGCGGGACCG GGGGCGGGAC CCGGGACGGG
  GGCGGGGACC GGGACCGGGA CCGGGGCCGG GGCTGGGGCC AGGAGTTGCT GCAGGTAATT
  Y
  GCGCCGGTCC TCCGCAGCTG CAACGTCGCC TGCTGGTGGA GGTTCTTGGC CAGCTCCCGT
  GCCACATCCG GGCGGCCACT GCGCCGTAGG GCTCGGGCCA CGCGGTCCCA CGACAGGGAC
  GGAGCCTGAG CGGCCAACCA GGTTGCCAGC GCCTCGCGGC AGCGGTCAGA AACCTCACTG
  GACTCGGATG TGCCCTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39320437	mCV25401756	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss325085110	CHEV_15_100877238	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31734761					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100944688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	within coordinates
Rr509881	regulatory region 509881	20 bp proximal
Rr509882	regulatory region 509882	580 bp proximal
Scn8a	sodium channel, voltage-gated, type VIII, alpha	869 bp downstream
Tmdd1	transmembrane and death domain 1	Coding-Synonymous
Tssr136507	transcription start site region 136507	555 bp downstream
Tssr136508	transcription start site region 136508	573 bp downstream
Tssr136509	transcription start site region 136509	594 bp downstream
Tssr136510	transcription start site region 136510	613 bp downstream