rs31735087 SNP Detail

Summary

• ID
  rs31735087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127186501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTACACT CACTGTACCC
  AGCACTGTGA GGCAGAGGCA GGCGGATCTC TTGAGTTTGA GGCCAGCCTG GTCTACAGAG
  TGAGTTTCAG GATAGCCAAA GCTACAAGGA GAAACAATGT CTTGAAAACC CCCCAAAAAA
  CAACTTTGAG TCCTTGTCTT GCTCTGTGTG ACCTTGATGA AGTCCCCTGG GCCTTGGCAT
  Y
  GGTGTGCACA GTGCTCCATC ATTGCAGCTG TGTACATTCC TGCCTTTGCC TCCCTTCTCA
  CACCGCCACT TTACACTGAG GCACCTGGCA CGCTGGTGAC TCGTTACCTT GAGCACTTCT
  CAGTCTCATC TTTGTAAAAC TGGAGAGCCC TGGCTGGACA GGACTGTTGA GGACACCTTA
  CAGGAGTAAT ACAAATGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46063798	mCV24902534	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss47263639	NES11575398	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	C	C	C	C	T	C	C	T
ss145881299	ENSMUSSNP6621726	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31735087					SNP	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47263639	NES11575398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127186501 () rs orientation: forward

Symbol	Name	Function Class
Cfap119	cilia and flagella associated protein 119	within coordinates
Cpgi19755	CpG island 19755	554 bp proximal
Rnf40	ring finger protein 40	1435 bp upstream
Rr400653	regulatory region 400653	1089 bp upstream
Tssr69263	transcription start site region 69263	1385 bp upstream
Tssr69264	transcription start site region 69264	1410 bp upstream
Tssr75012	transcription start site region 75012	790 bp downstream
Tssr75013	transcription start site region 75013	816 bp downstream
Tssr75014	transcription start site region 75014	865 bp downstream
Tssr75015	transcription start site region 75015	908 bp downstream
Tssr75016	transcription start site region 75016	936 bp downstream