rs31737117 SNP Detail

Summary

• ID
  rs31737117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG TGGCTGGCTT TGTACAGAAC
  R
  TGGAGTCTGA ACTAGATACC TAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45065321	mCV24779912	ABI	CRAMUS_MOUSE	f	SNP	G	A					A	G
ss60822399	NES16493736	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A			G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31737117					SNP	G	A	A	A	A	A	A	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822399	NES16493736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	847 bp distal
Lamc2	laminin, gamma 2	867 bp upstream
Rr13130	regulatory region 13130	within coordinates
Rr25076	regulatory region 25076	932 bp proximal
Rr28719	regulatory region 28719	659 bp distal
Tssr14250	transcription start site region 14250	1258 bp upstream
Tssr14251	transcription start site region 14251	1222 bp upstream
Tssr14252	transcription start site region 14252	1192 bp upstream
Tssr14253	transcription start site region 14253	1178 bp upstream
Tssr14254	transcription start site region 14254	1159 bp upstream