rs31738684 SNP Detail

Summary

• ID
  rs31738684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:83920048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGATTTG ATGAGTCTTG
  AGAAGTAGAA AAAACAGTGA AGCCTGACAA GTGGTCATGG CCTCCATTCA GCGGACAGCA
  AACCATTCAG TAGATGAAAG TTTCCAAGAT GGCCATAGTG AGCCCTTCCC TTTATGGGCA
  AAAGAACGTA TTTGTCTCTC CATCACGGGT TACAGTCTAT CTCCATCCCA GGTTACAGTC
  Y
  ATCTTCATCC CAGGTTACAG TCTATCTCTA TCCCAGGTGT AGTGGCTATT CCTGGTTGTC
  AACTTGACTA TATTTGGAAT GAACTACAAT CCAGAATTGG AAGGCTCACC AGTGACCCTT
  ATCTGGAGGC TTGGAGATCC TTATCTGGAT CTTGGTATGG AGATCTTGAG CCATAGTGGC
  TATGGATTCC AGAAGATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss48083669	NES12081164	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31738684					SNP	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48083669	NES12081164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:83920048 () rs orientation: forward

Symbol	Name	Function Class
Efcab6	EF-hand calcium binding domain 6	within coordinates
Rr308220	regulatory region 308220	1152 bp proximal
Rr308221	regulatory region 308221	1552 bp proximal
Rr308222	regulatory region 308222	1953 bp proximal