rs31738690 SNP Detail

Summary

• ID
  rs31738690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:83921622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGGTCC AGCCTACCAT
  CTGGAGGGGA CAGGACAGAC AAGGGCAAGC AGCCAGTATG TCACCGGGTA GTGACAGATG
  GTGGTGAACG CAGCAAGAGT GGCAAGAGAT CAGCAGAGTG TGGGACGGTG CCACCAAGGG
  CTGGTCTAGC CAGACAGGTG GTCTAGGATC CCTCCTCAGG GAGTTTGGGA GCCAAGACCA
  R
  AATGTTAGAA ATGAACCACC AGTTAGCAAG CAGAGGTGAC TACATTCCAA ACATAGACCA
  GAGTGGCCTT GTAAGAGCTT TGTATGGGAG CAACCTGAGT CTGTCTGAAA GAACGAGGAG
  GCCAGAAGCA GGCAGGACCA GAGAACACCA GAGAAGCAAC AACAATATCC CATTCCAACC
  GCTACAGAGG CTGTCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48083675	NES12081063	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31738690					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48083675	NES12081063	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:83921622 () rs orientation: forward

Symbol	Name	Function Class
Efcab6	EF-hand calcium binding domain 6	within coordinates
Rr308220	regulatory region 308220	221 bp distal
Rr308221	regulatory region 308221	within coordinates
Rr308222	regulatory region 308222	379 bp proximal