rs31738843 SNP Detail

Summary

• ID
  rs31738843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148784158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT ATATTAAATA CACATGTATG
  Y
  ATATACATCA CATGCATATG CACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45565047	mCV23014070	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31738843					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148784158 () rs orientation: forward

Symbol	Name	Function Class
Rr587253	regulatory region 587253	989 bp distal
Rr587254	regulatory region 587254	433 bp proximal
Tssr36091	transcription start site region 36091	1422 bp upstream
Tssr36092	transcription start site region 36092	1394 bp upstream
Tssr36093	transcription start site region 36093	1362 bp upstream
Tssr36094	transcription start site region 36094	1329 bp upstream
Tssr36095	transcription start site region 36095	1256 bp upstream
Tssr36096	transcription start site region 36096	1159 bp upstream