rs31738955 SNP Detail

Summary

• ID
  rs31738955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165950445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATATGCCC ATGATAAAAA TGAATATTTT GAAGCAGGGT
  GTGGTGGCAC ACGCCTTTAA TCCCAGCACT CGGGAGCAGA GGCAGGCAGA TTTCTGAGTT
  Y
  GAGGTCAGCC TGGTCTACAG AGTGAGTTCC AGGACAGCCA GTGCTACACA GAGAAACCCT
  GTCTAGAAAA AACCAAAAAA AAAAAAAAAA AAAAAAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45065430	mCV23028206	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146013054	ENSMUSSNP4145214	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31738955					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165950445 () rs orientation: forward

Symbol	Name	Function Class
Rr372394	regulatory region 372394	1226 bp upstream
Rr422532	regulatory region 422532	351 bp proximal
Styxl2	serine/threonine/tyrosine interacting like 2	Intron
Tssr14808	transcription start site region 14808	1731 bp upstream