rs31740098 SNP Detail

Summary

• ID
  rs31740098
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126359621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGTACAC CAGTGCCAGC CCAAGAGCAC TCTCCTGTCC
  AGGATTCAGG GAAAACGGAG AACACATCTC CACTTCATCC CCAAACTAGG AAAGAAGGCA
  K
  GAGGAAACAA CTACCTCTCT GCCATTCTGT CCCCAGGAAA GCTGCACAGC TGTACAGTCT
  CTACTCCCCA ACCTCGCCCT GCCCCCAGCT TTTAGTCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45566604	mCV25174249	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss147409134	ENSMUSSNP3012613	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321300073	CHEV_4_126143072	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31740098					SNP	T	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126359621 () rs orientation: forward

Symbol	Name	Function Class
Ago1	argonaute RISC catalytic subunit 1	within coordinates
Cpgi14821	CpG island 14821	1988 bp proximal
Rr377145	regulatory region 377145	within coordinates
Rr599694	regulatory region 599694	within coordinates
Rr599695	regulatory region 599695	1392 bp proximal
Tssr39001	transcription start site region 39001	287 bp upstream