rs31740223 SNP Detail

Summary

• ID
  rs31740223
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154930613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCATTTCT GGGTAACTTC ATAAGCTTGC CTCTATATTG
  CAAGAGGAAT TAGGCACAGG GGTTCCAGTT TCTACCTAGT GACCTATAAA TAAACACTTG
  M
  ACACAATGTG CACGTCACTT ATACCCAGTC CGGCTGGGCG GGGGGGGGGG TGGGGGGGTG
  GGGGGAGGGT CAGTTCCCTT TTTGAATATC ACACTGTCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	MOLF/EiJ	WSB/EiJ
ss45065265	mCV23095488	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss49516964	NES12844976	PERLEGEN	MM_PANEL2	f	SNP			C	A	C
ss145774404	ENSMUSSNP3430500	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	MOLF/EiJ	WSB/EiJ
rs31740223					SNP	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516964	NES12844976	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154930613 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	within coordinates
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	1657 bp upstream
Gm71001	predicted gene, 71001	within coordinates
Rr372279	regulatory region 372279	242 bp upstream
Tssr247	transcription start site region 247	87 bp upstream
Tssr9520	transcription start site region 9520	105 bp upstream
Tssr14327	transcription start site region 14327	106 bp upstream
Tssr14328	transcription start site region 14328	56 bp upstream
Tssr14329	transcription start site region 14329	3 bp upstream
Tssr14330	transcription start site region 14330	312 bp downstream