rs31740335 SNP Detail

Summary

• ID
  rs31740335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78136360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TGGCATCACA GGTGCCCACC
  Y
  TTCCTGCCCT ATTGCACAGG GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss39320394	mCV27572896	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148180850	ENSMUSSNP393396	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss325024227	CHEV_15_78082590	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs31740335					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78136360 () rs orientation: forward

Symbol	Name	Function Class
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505232	regulatory region 505232	330 bp distal
Rr505233	regulatory region 505233	222 bp distal
Tssr131902	transcription start site region 131902	1531 bp downstream
Tssr131903	transcription start site region 131903	1258 bp downstream
Tssr131904	transcription start site region 131904	1061 bp upstream
Tssr131905	transcription start site region 131905	1112 bp upstream