rs31742538 SNP Detail

Summary

• ID
  rs31742538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126291565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTTGTC CTTTCGGAGG
  CTCGAACAGC CTCTGGCTGG TACTATAGGT TCGGAAAGAA CTGCCCTCCT CATTAGACAT
  GTGTCAGGGT GGGCAAAGTC CCAGGTCTCC GCCCCGATGT GCCCTTACCT GCAGCAGACG
  CGCACACAGA CTGCATCTGG CCTTGGTACC TAGATCCAGC TGTCGCTCGC TGTCAGCCTC
  R
  CTTACAGCTG GTCGTTTTGG GACTAAGGGC TGGGGTGGAG GTGGTCCAAA GGCAATGGGC
  ATGTGTGCCG GTGGCGCTGG ACAGAGTTCA TGGCGGAAGT CAGGTCGCAG CCAACGCAGT
  GTTAGAGGAA GGCGCACCCA CGGAGGAACT CGAAGCATGT GCGCCAGAAC GCGCAAGTGG
  AAGGCAAAGG CAGCCTCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46064011	mCV23683968	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss145875713	ENSMUSSNP186532	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31742538					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126291565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr400629	regulatory region 400629			988 bp upstream
Rr655563	regulatory region 655563			1325 bp distal
Rr655564	regulatory region 655564			745 bp proximal
Rr655565	regulatory region 655565			1037 bp proximal
Rr655566	regulatory region 655566			1213 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant