rs31742541 SNP Detail

Summary

• ID
  rs31742541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:144415665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC ACCCCTTGGG CTCCAGGACT
  R
  AGAGCGCACC CGGCGGCCGA GCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46064014	mCV24316493	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145992482	ENSMUSSNP6267663	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A		G
ss322484928	CHEV_7_152047833	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31742541					SNP	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:144415665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20003	CpG island 20003	within coordinates
Cpgi20004	CpG island 20004	713 bp proximal
Fgf4	fibroblast growth factor 4	within coordinates
Rr366757	regulatory region 366757	539 bp downstream
Rr366758	regulatory region 366758	1532 bp upstream
Tssr70358	transcription start site region 70358	533 bp downstream