rs31743434 SNP Detail

Summary

• ID
  rs31743434
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27369681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTACTGCCC ACAGTGGTCT AGGTCCTTCC ATGTCAACTA ACAATCAAGA AAGATACTCC
  CAGAGGATGG TCCAATATTA CCAATTCCTT AATTGATGTT CTGTCTTTTC AGGTATGTTG
  AGTTGACAAC TGAAATTGAC TATGTCATTG TGTAAGTGTC AAGGAATAAA AAAATACTAT
  TATAAAAGAA AGAGAAACAA AATGTGGCTA TTAACACACA GGCAAAGGAA TATGACTATT
  TGGTTTATGT TGTTTTTACA GGTCACACAG ATTGCTCTTG ATTCCCTTTC AAAAAAAAAA
  W
  AAATAAAAGC AAAATGGAAA CGCCATTTTA AACTCCCACG TCAGTAAAAC GAGGCAATGG
  TTGGGGCTGG GGAGACGGTA AAGTGTTCTC TGTGTGAGCA CGAGGACCTT AGCTTGGATT
  ACCAGCACTC ACAGGTGGGC CTGGTGGTCT GTGGCTGCGA TCCCAATCAG TGCCCGGAGG
  TGGAGACAGG AAGATCCCTG TGTGAGCTTC AGCTTCAGTG AGAGACTGTC TCAGGAAGAT
  GGTAACTTAG TTACAGCACC ACAGTAGAGT ACTACTTCTA AAGACCTTTT AGCAGGTGAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45566061	mCV24243141	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss134703853	ENSMUSSNP4813094	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31743434					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27369681 () rs orientation: forward

Symbol	Name	Function Class
Rr574391	regulatory region 574391	481 bp distal
Rr574392	regulatory region 574392	1192 bp proximal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10	1545 bp upstream
Tssr846	transcription start site region 846	1554 bp upstream
Tssr28624	transcription start site region 28624	1364 bp upstream
Tssr28625	transcription start site region 28625	1487 bp upstream
Tssr28626	transcription start site region 28626	1527 bp upstream
Tssr28627	transcription start site region 28627	1574 bp upstream
Tssr32848	transcription start site region 32848	1448 bp downstream