rs31743974 SNP Detail

Summary

• ID
  rs31743974
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20987417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA ATCTGAGGTA AATACAACAC
  K
  CTAAGATTTG ACAAACCCTT GTTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45066485	mCV24135303	ABI	CRAMUS_MOUSE	f	SNP	G	T				G	T
ss51232302	NES14289223	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T			T		T	T	G		G
ss148726369	ENSMUSSNP5993039	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T					T
ss319654645	CHEV_1_20907274	CHEVERUD	SCREENING_POP	f	SNP									G				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31743974					SNP	G	T	T	T	T	G	T	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51232302	NES14289223	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20987417 () rs orientation: forward

Symbol	Name	Function Class
Gm24171	predicted gene, 24171	1653 bp upstream
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Tssr6058	transcription start site region 6058	647 bp upstream
Tssr6059	transcription start site region 6059	663 bp upstream