rs31743977 SNP Detail

Summary

• ID
  rs31743977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185868205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAAA AAAAAAGCTT AAAGCTTTTG AAGGCATTTT
  TTCTTCTTCT TAGTAAGTGA AAAATCAGGG TCTTTTTCTG TTTTTATCCA GAACATACAC
  R
  AAAGGGTACA AATGGACCTG ATGAAATTTT TTAATTAGTT AATGATTCCT GCTTACTTCG
  GTTGGGGGAA GAAATGTAGA TTTATGGGTA TTTTAAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45066490	mCV24949006	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss320182226	CHEV_1_187959887	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31743977					SNP	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185868205 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	745 bp proximal
Rr425454	regulatory region 425454	1836 bp proximal
Tssr10623	transcription start site region 10623	1931 bp upstream