rs31743995 SNP Detail

Summary

• ID
  rs31743995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:167629624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGCAT CACAATAGCA
  TAAACTGGAC AACAACCGCC CATTTATGTA TCTGTGCGAC ATGATATTGT GTGTGATGGA
  ACTCCTGTTA CATCAGGACC GTATTTTATT CTTAGCTTCT TGTCTTTCTC TTTAATGATT
  CTATTTGTTC AATTCAGTGT GGTACAAATG AGTCCAGTTT TCATTGGATA AAATATTTTA
  Y
  GGAAGATATT ATATTTTGTC TGCTCTTGGG AACTTTTTAG TTATACTAGG TTGCATCTTC
  CAGCTTTGAT ATGAGGGATT TTGTTTAGTC TTACTGGAAC TTGTTATGCT GTGTTCTGTT
  GATATGTCTG TTCATTTCTG AAGGGAAAAG AAGGAGGAGT GGATCTGGGA GGTGGCGGCG
  GGGGGCATTA GGAGGAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss47085325	NES11020154	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs31743995					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47085325	NES11020154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:167629624 () rs orientation: forward

Symbol	Name	Function Class
Arhgap6	Rho GTPase activating protein 6	within coordinates
Rr9578	regulatory region 9578	825 bp distal