rs31744409 SNP Detail

Summary

• ID
  rs31744409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84011690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACCCTTC TACCTACCCG
  CCTGCCTACC TACCTGCCTG CCTACATCAC TGACAGCCAG CAACAGGCTT TTCGAACAGA
  AGCAGAGGCT CAGAGCAAAG AACATCTCAA CCCTTGAAGG GAATGAATGG ATCAGCAAAT
  CGGAACAGAA CCAACTATGG TACTGACAGA CTGACAGACA GAGGCGGCTG GGGAAGAGCC
  Y
  TGCACAAGCC GGATAGTGTG ATAGGAACCC CAGAGTCCCA TACATCTGTG AAAGGCAGCG
  TTTGGTGGGT TTGGGGGATT TATTTGTTTG TTTGTTTGCT TTGCTTTGCT TTGTATGCTT
  GTTTGCTTTT TGTGGTCTCA CTTTAGAGCC CTGGCTGGCC TGGAACTCTC TTTAAGTCCA
  GGCCTTAAAC TCACAGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48084131	NES12077398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31744409					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48084131	NES12077398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84011690 () rs orientation: forward

Symbol	Name	Function Class
Gm33432	predicted gene, 33432	within coordinates
Rr304809	regulatory region 304809	90 bp distal
Rr304810	regulatory region 304810	1711 bp proximal
Rr310902	regulatory region 310902	202 bp distal
Tssr132442	transcription start site region 132442	169 bp downstream
Tssr132443	transcription start site region 132443	155 bp downstream
Tssr132444	transcription start site region 132444	123 bp downstream