rs31744804 SNP Detail

Summary

• ID
  rs31744804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:167630064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGAGAT GATTTGACCC
  CAGCACATAA CAGTTATCAC TGAGGATCTG TTATCACGAT TATTTCCATT TCTACTTGTT
  AAAATGGAAT CATATGCATG TTGATAGTCT TCAATCTTGA TGAATAAATG GTGTATGCCA
  TAACTGATAT GTACATATGT ATTAATTCCC TGTTGCTATG GCAACAAACT ATTGTGTGCT
  Y
  AGTAGATTTG GAAAATACCA TCCTTAAATG GGACTTGTGT ATCACCACTT CCCCCACCAA
  GGCACAGGTG CTATGGTGGA AATAAGAGAG TGAGGATGAG AGAAGAATGT CACAAAACAT
  TGCCATTGCA ACTATGAGCA CACAGCATCT ATGGATGCCT GTACTAGACT GGGCCCTTCA
  ACTTTCCATC TTGGATAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47085334	NES11020104	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31744804					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47085334	NES11020104	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:167630064 () rs orientation: forward

Symbol	Name	Function Class
Arhgap6	Rho GTPase activating protein 6	within coordinates
Rr9578	regulatory region 9578	1265 bp distal