rs31744807 SNP Detail

Summary

• ID
  rs31744807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:167630324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACAGGT GCTATGGTGG
  AAATAAGAGA GTGAGGATGA GAGAAGAATG TCACAAAACA TTGCCATTGC AACTATGAGC
  ACACAGCATC TATGGATGCC TGTACTAGAC TGGGCCCTTC AACTTTCCAT CTTGGATAGA
  GGAGCTGCCC CCACGAGTTG CTATGTTTTT GTGCACAGCT AAATATGGTT AGCAGGTGCT
  R
  GAGGAGAAGG TTCTATTTTC TCTAACAGTT TAGTTATGGG AACTAGGGGG AAAGAAAGAG
  TTTAGAGGGG AAGTAAAGGG GCACAATAGG ATAACGCAGG GCAACTATAA TCATAATACA
  TTGTATACAT GTATGAAATT TTCTATAATA AAGTACTGAC TGTGGTCACT AGACAACTAA
  TGGGGAAGAC CACCTCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47085337	NES11020039	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31744807					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47085337	NES11020039	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:167630324 () rs orientation: forward

Symbol	Name	Function Class
Arhgap6	Rho GTPase activating protein 6	within coordinates
Rr9578	regulatory region 9578	1525 bp distal