rs31745418 SNP Detail

Summary

• ID
  rs31745418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:167499189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCTCAC GTGACTGCAC
  ACTTGGACTA TGTTCTGACC ATAGAGAAAA AGGAATGTAA AAATGAAAAC AAGTGGAAGG
  TACTGGAGAG TCTCTCTTGG CCTCTGCTGG GTGACCTGGG GGAAAGAGAC TATAGTTTCC
  AGGACTTAAC CTTGAAAGAG ATGACATTCA AAGGAAGTCA GAGCAAGATG TAGTCTGAGG
  Y
  TACTAAAGCC ACTGACTGTT GTTTTGAATG TTCAATAATG AAACAAGGGT AATTTTGGTT
  TCCCTGTGAC ATAAACTCAT GTCCCTGTTA TCAACTAATG TTAAACTAAT AGCACAAATT
  TATTTTTTCT AATTAATATT TCACGAAAAA ACTCTCATTG ATTTCTTTTT AAAAAACAAA
  TAATAATATT TAAAACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47084458	NES11026282	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31745418					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47084458	NES11026282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:167499189 () rs orientation: forward

Symbol	Name	Function Class
Rr3684	regulatory region 3684	1812 bp proximal
Rr7115	regulatory region 7115	1821 bp proximal