rs31746078 SNP Detail

Summary

• ID
  rs31746078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAGAAA TGTCTCTTAG
  AGCTTGAAAA TGAAATGCCT GGGGAGCACT GTACCGGGCC AAGCCCAGCT CTATCTGAAC
  ATCTCATAAA TGTCCCGACA AGCATAGCCT GACAGCGAAG AAAATGTAGG AGAACCAGTT
  CTGAAATGCA GTGAGACGGA ATAAAGGAAA GCTCAGGCTC AGCTGCTCAC GGAAGTTCAC
  R
  TGCACAAGCA TCCTAAGCAA GGAGCGACTG TTCGGGCATA TGTATGTACT GTTCGGGCGT
  ATGTAGAAAT GTGTGTGTGC AGAAAGGAAG TAGGAAGGGG TGGGCCAGAC TGAAAATACT
  GATGGTCCAC ATAGAACACT TTGAATGGCA GAGTAAGACT GATCAGACAA CTCAAAGAAA
  TATATTACAT ATGCAACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45566561	mCV24302380	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss135873386	ENSMUSSNP3823769	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320957595	CHEV_3_127564530	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31746078					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655261 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	1572 bp downstream
Rr584887	regulatory region 584887	within coordinates
Rr584888	regulatory region 584888	901 bp proximal
Tssr31614	transcription start site region 31614	within coordinates