rs31746267 SNP Detail

Summary

• ID
  rs31746267
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:167499702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTCTCC TGTCTCTCTC
  GCCCAAGTCA CTACAGGAGT ACTGGGATTA CAGATGCATG CTACCGTGTC TGACTTTCAT
  GTAGCTTTTG GGATCTGAAC TCAGGTCCTC ATGCTTGCAA TTTGTCTATT AAGCTGTTTC
  CTCAGCCTCC AAACGAGCCA TTTTTCTTTT CTTTTCTTTT TTTTTTTGAC ATAATAGTTG
  M
  TGCACATTAT GCATTTTGAT CATTTTCTCC CACAATTCTA GATCACATCC CACTTCCTCT
  ACCCAGGAAC CTCTTCTTCC CAACAAGTGC CCCTACAATA GAATAGTCTT AATTCAGACA
  AGGAACTGGT ACGTAGAGAG CAGACAGGAG AGATATTATC CAAATAAAAA ATAACATAAT
  CACCCAAGAA TGAGAAGATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47084467	NES11026238	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31746267					SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47084467	NES11026238	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:167499702 () rs orientation: forward

Symbol	Name	Function Class
Rr3684	regulatory region 3684	1299 bp proximal
Rr7115	regulatory region 7115	1308 bp proximal