rs31747016 SNP Detail

Summary

• ID
  rs31747016
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:167500132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCATTATT TATTATAAAA
  ATAGATAATA AATTATCATG TAAGAGTTTA TGTTTTGATT TTTCAGTTAT GTTTAGCAAT
  GCATGACTAT CTCTGTTCTA TAGTTTGATC TTTTCTTTAG AACTCTCTCA GTTCACAATT
  CTCTCTATAA CTCTGTCTAT TCTGTTATTT AACTCCCTTG ATAACTGCTC TGCTTGAATG
  M
  TCAAATCTGA TTATTTGATT ACTTTTGTGC TTTGTTATTA GTCATGACAT TTGATTTCCT
  TTATGCTTTC TAAACTTTGT GAGTTCATCT TTAGAAATGA CTCTATAAGG TTCCTTTGTA
  CAGCCTACTT TTTGCTTTCA GGGTCACTTG TCATAGATCT ATAGGGTTCA ACTTTCGTCA
  ATAAGATAAT TGTTTATATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47084476	NES11026158	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31747016					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47084476	NES11026158	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:167500132 () rs orientation: forward

Symbol	Name	Function Class
Rr3684	regulatory region 3684	869 bp proximal
Rr7115	regulatory region 7115	878 bp proximal